GgaEX6015594 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8992416-8993936:+
Coord C1 exon
chr17:8992416-8992611
Coord A exon
chr17:8993150-8993289
Coord C2 exon
chr17:8993754-8993936
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTGTTGCCCCACAGTTA
3' ss Score
10.1
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCGTAAACTGTGAAGCTGAAATAGATGAATGTGATTCATACCCTTGTCAGAATGGGGCCTTGTGCAGTGATCATATTGGGTTCTACACCTGCACCTGTATGCCAGGTTACCAAGGAATCCAGTGTGAGGTGGACATCAATGAATGTATAAGCCAGCCATGCCAGCACAATGGAACATGTCATGATCTTATTAACAG
Seq A exon
TTACCAATGTGACTGCAGTGACACAGGCTTTGAAGGGGACCACTGTGAGTTGGATATCCTGGAGTGTGCCTCTGAGCCCTGTCTGAACAATGCCACATGTGTTGAAGGAATCAAGAACTACAGCTGTGCCTGCTGGACAG
Seq C2 exon
GTTACACAGGGCAGCATTGTGAAGAGGATGTGAACGAGTGTGCGACAGATCCCTGTCACAATGGAGGTGTATGCTTTGAGCGATCCAACCAGTCTTATTATGGATCACAACCTGACTTCCCCAGCGATTTCAGCTACAGCCAAGCAGCTGGTTTCCTCTGTTGGTGCCAGCCAGGCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0764510=EGF_CA=WD(100=56.1),PF0000822=EGF=PU(55.9=28.8)
A:
PF0000822=EGF=PD(41.2=29.2),PF0000822=EGF=PU(80.6=52.1)
C2:
PF0000822=EGF=PD(16.1=8.1),PF0000822=EGF=PU(94.1=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCTGCACCTGTATGCC
R:
TGGCTGTAGCTGAAATCGCTG
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]