GgaEX6015594 @ galGal3
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9705524-9706832:+
Coord C1 exon
chr17:9705524-9705614
Coord A exon
chr17:9706153-9706292
Coord C2 exon
chr17:9706757-9706832
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTGTTGCCCCACAGTTA
3' ss Score
10.1
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTACCAAGGAATCCAGTGTGAGGTGGACATCAATGAATGTATAAGCCAGCCATGCCAGCACAATGGAACATGTCATGATCTTATTAACAG
Seq A exon
TTACCAATGTGACTGCAGTGACACAGGCTTTGAAGGGGACCACTGTGAGTTGGATATCCTGGAGTGTGCCTCTGAGCCCTGTCTGAACAATGCCACATGTGTTGAAGGAATCAAGAACTACAGCTGTGCCTGCTGGACAG
Seq C2 exon
GTTACACAGGGCAGCATTGTGAAGAGGATGTGAACGAGTGTGCGACAGATCCCTGTCACAATGGAGGTGTATGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(12.1=12.9),PF0000822=EGF=PU(50.0=61.3)
A:
PF0000822=EGF=PD(41.2=29.2),PF0000822=EGF=PU(80.6=52.1)
C2:
PF0000822=EGF=PD(16.1=19.2),PF0000822=EGF=PU(37.5=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAATCCAGTGTGAGGTG
R:
AGCATACACCTCCATTGTGACA
Band lengths:
162-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]