BtaEX6046115 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039223 | WDR38
Description
Bos taurus WD repeat domain 38 (WDR38), mRNA. [Source:RefSeq mRNA;Acc:NM_001163946]
Coordinates
chr11:95846743-95848746:+
Coord C1 exon
chr11:95846743-95846863
Coord A exon
chr11:95848416-95848532
Coord C2 exon
chr11:95848649-95848746
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCATGGCCACCCGCCCCAGGCC
3' ss Score
4.16
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GTCAACTCTTCAGCCTTCTCTCCCGATGGCCAGAGGCTGCTCACGGCCTCTGAGGACGGCTGTGTATATGGCTGGGAGACCCAGAGCGGGAGGCTACTGTGGAGACTGCGTGGCCACAAAG
Seq A exon
GCCCCGTGAGGTTCTGCCGCTTCTCCCCTGATGGCCGCCTCTTTGCCAGCACCTCCTGTGACCGCACCATCCGCCTGTGGGATGCCACAGATGCCAAGTGTCTGCAGGTCCTGAAGG
Seq C2 exon
GTCACCAGCGGAGTGTGGAGACCGTCAGCTTCAGCCATGACTCCAAGCAGCTGGCCTCGGGTGGCTGGGACAAGAGGGTGATGCTTTGGGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039223-'2-5,'2-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(67.6=61.0),PF0040027=WD40=PU(28.2=26.8)
A:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
C2:
PF0040027=WD40=PD(76.9=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACTCTTCAGCCTTCTCTCC
R:
CTGCACCTCCCAAAGCATCAC
Band lengths:
219-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]