DreEX6083020 @ danRer10
Exon Skipping
Gene
ENSDARG00000044801 | wdr38
Description
WD repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050417-160]
Coordinates
chr21:5756594-5759961:+
Coord C1 exon
chr21:5756594-5756714
Coord A exon
chr21:5758915-5759031
Coord C2 exon
chr21:5759864-5759961
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTGTTGTTCTGCAGGTC
3' ss Score
11.28
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GTGAACTGCTGCGCTTTCTCTCCTGACTGTCAGCTTCTGCTCACCTGTTGTGATGCCGGCAAACTCTACCTATGGAAAACTAGCACCGCCAAACTCCTGGCCTCAGTCAGCGGACACACGG
Seq A exon
GTCCAGTGAAGTGCTGTGTTTTTTCCAGTGACGGTCGGCTGTTTGCGAGCGCGTCTCATGACTGCAGCGTCCGAATCTGGTGCAGCTCCAGCCTCAAATGCACACACACACTGACAG
Seq C2 exon
CTCACAGGCGCAGTGTGGAGACGGTGAGCTTCAGTCCGGACGGTCAGTGGCTACTTTCGGGTGGATGGGACAACAGAGCCCTGATCTGGAGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044801-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(65.8=61.0),PF0040027=WD40=PU(28.2=26.8)
A:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
C2:
PF0040027=WD40=PD(76.9=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGCTGCGCTTTCTCTC
R:
CTGAATGCTCCAGATCAGGGC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]