RnoEX6016675 @ rn6
Exon Skipping
Gene
ENSRNOG00000014102 | Wdr38
Description
WD repeat domain 38 [Source:RGD Symbol;Acc:1562587]
Coordinates
chr3:23292234-23293389:+
Coord C1 exon
chr3:23292234-23292354
Coord A exon
chr3:23293087-23293203
Coord C2 exon
chr3:23293292-23293389
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCATGTGTTCTCTGCCTCAGGCC
3' ss Score
9.76
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCAACTGCTCTGCCTTCTCCCCTGATGGCCGGAACCTGATCACAGCCTCAGATGATGGTTGTGTGTATGTATGGGGGACGAAGAGTGGGCGACTGCTGTGGAGACTGGCAGGCCACAAAG
Seq A exon
GCCCAGTGAAGTCTTGCCGTTTCTCTCCCGATGGCCGCCTCGTTGCCAGCTCCTCCTGTGACCACACCATCCGCCTGTGGGATGTGGCAAAAGCCAAATGCCTGCATGTGCTGAAAG
Seq C2 exon
GTCACCAGAGGAGTGTGGAAACTGTCAGCTTCAGCCCTGACTCAAAGCAGCTGGCATCAGGTGGCTGGGACAAGAGGGTGATTCTCTGGGAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014102-'9-3,'9-1,12-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(80.6=61.0),PF0040027=WD40=PU(28.2=26.8)
A:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
C2:
PF0040027=WD40=PD(76.9=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACTGCTCTGCCTTCTCC
R:
TGCACTTCCCAGAGAATCACC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]