BtaEX6046182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010228 | LMX1B
Description
LIM homeobox transcription factor 1, beta [Source:HGNC Symbol;Acc:HGNC:6654]
Coordinates
chr11:97475306-97478091:+
Coord C1 exon
chr11:97475306-97475540
Coord A exon
chr11:97477666-97477847
Coord C2 exon
chr11:97478014-97478091
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTGCATCGTGTTCCCCACAGTGA
3' ss Score
8.71
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGCTCTTTGCGGCCAAGTGCAGTGGCTGCATGGAGAAGATCGCCCCCACCGAGTTCGTGATGCGGGCGCTGGAGTGCGTGTACCACCTGGGCTGTTTCTGCTGCTGCGTGTGTGAACGGCAGCTACGCAAGGGCGACGAGTTTGTGCTCAAGGAGGGCCAGCTGCTGTGCAAGGGTGACTACGAGAAGGAGAAGGATCTGCTCAGCTCCGTGAGCCCCGACGAATCCGACTCCG
Seq A exon
TGAAGAGCGAGGATGAGGATGGGGACATGAAGCCGGCCAAGGGACAGGGCAGCCAGAGCAAGGGCAGTGGGGACGACGGGAAGGACCCTCGGAGGCCTAAGCGGCCCCGGACCATCCTCACGACGCAGCAGCGCAGAGCCTTCAAGGCCTCCTTCGAGGTCTCCTCCAAGCCCTGCCGGAAG
Seq C2 exon
GTCCGAGAGACGCTGGCGGCGGAGACGGGCCTCAGCGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010228-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.770 C2=0.192
Domain overlap (PFAM):
C1:
PF0041217=LIM=WD(100=74.7)
A:
PF0004624=Homeobox=PU(47.4=44.3)
C2:
PF0004624=Homeobox=FE(43.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGGAGAAGATCGCCC
R:
GACCACACGCACGCTGAG
Band lengths:
257-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]