DmeEX6016330 @ dm6
Exon Skipping
Gene
FBgn0036274 | CG4328
Description
This gene is referred to in FlyBase by the symbol DmelCG4328 (FBgn0036274). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3L:12290956..12296123. Its molecular function is described by: RNA polymerase II regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with: positive regulation of transcription by RNA polymerase II; neuron differentiation. 10 alleles are reported. The phenotype of these alleles manifest in: mesothoracic tergum. The phenotypic classes of alleles include: some die during pupal stage; partially lethal - majority die; body color defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages.
Coordinates
chr3L:12291300-12292097:-
Coord C1 exon
chr3L:12291883-12292097
Coord A exon
chr3L:12291639-12291826
Coord C2 exon
chr3L:12291300-12291570
Length
188 bp
Sequences
Splice sites
3' ss Seq
ATAACCATATAACTATGTAGATT
3' ss Score
3.85
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACTCTACATCCGCAATCATTGCCTTGGCTGTGGCCTTAAAATCGCCGCCGATGAGCTGGTGATGCGATGCCACGAGAACGTCTTCCATCTAAAGTGCTTCGCCTGTGTGGTGTGTGGAGCTCTGCTGAAGAAGGGGGAGCAGTATGTGGTCAAACAGGGGCAGCTCTTCTGCCGCTTCGACTACGAGAAGGAGGTGGAGATGCTACAGGGATACG
Seq A exon
ATTTCTATGGCGATGAGCTTTTCCCGCCCAAATTAGACGGACGAAGAGGACCCAAGCGACCGAGAACCATTCTAAACACGCAGCAAAGACGAGCTTTTAAGGCCTCCTTCGAAGTCTCACCGAAACCGTGTCGAAAAGTGAGAGAGAATCTGGCCAAGGATACTGGATTAAGCCTGAGAATTGTGCAG
Seq C2 exon
GTTTGGTTCCAGAACCAGCGAGCCAAGGTCAAAAAGATTCAGAAGAAGGCCAAGCAGGAGCCGCCCAGCAAAGGAGCTAGTGACTCGCAGGACTCGCAGGAATCGCTGGACAGCAGTCTGGCCACCAAAATCAAGGACGAGGCGCACAGCGACAGCGAATCACAGCTGGAATCGCCGTACTCGACGACCTCCGATGGACTGACCCGGATGCGATGCACCATTAAGGACGAACAGGAGCAAGTGCCCTTCAACTGTATGGAGACCAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0036274-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.769
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(3.6=2.7),PF0041217=LIM=WD(100=80.8)
A:
PF0004624=Homeobox=PU(77.2=69.8)
C2:
PF0004624=Homeobox=PD(19.3=12.1)
Main Inclusion Isoform:
FBpp0290293

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGTGCTTCGCCTGTGTGG
R:
GATTTTGGTGGCCAGACTGCT
Band lengths:
258-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)