DreEX6050759 @ danRer10
Exon Skipping
Gene
ENSDARG00000068365 | lmx1bb
Description
LIM homeobox transcription factor 1, beta b [Source:ZFIN;Acc:ZDB-GENE-050114-2]
Coordinates
chr8:33269315-33276458:-
Coord C1 exon
chr8:33276226-33276458
Coord A exon
chr8:33271745-33271920
Coord C2 exon
chr8:33269315-33269392
Length
176 bp
Sequences
Splice sites
3' ss Seq
AATGATGGATTCCTTTTCAGAGA
3' ss Score
7
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTTATTTGCGACCAAATGCAGCGGATGCCTGGAGAAAATTGCACCTACAGAATTTGTGATGCGGGCGCTGGAGTGTGTTTACCATCTCAACTGCTTCTGCTGCTGTGTATGTGACCGACAGCTGAGGAAAGGAGATGAGTTTGTGCTGAAGGACGGACAGTTGCTGTGCAAGAGCGATTATGAGAGGGAAAAAGACCTGCTCGGCTCTGTCAGCCCAGATGACTCAGATTCAG
Seq A exon
AGAAAAGCGAAGATGAGGAGCTGGATATCAAGCCGGAGAAAGGCTCGGGAGGCACCGGGAAGGGAGATGATGGGAAAGACCCTAGAAGACCCAAGAGACCACGTACCATCCTCACCACACAGCAGAGACGAGCCTTCAAGGCGTCGTTCGAGGTGTCTTCCAAACCCTGCCGGAAG
Seq C2 exon
GTAAGAGAGACACTGGCTGCAGAGACAGGTCTGAGCGTACGCGTGGTTCAAGTGTGGTTCCAGAACCAAAGAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068365-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.712 C2=0.115
Domain overlap (PFAM):
C1:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
A:
PF0004624=Homeobox=PU(47.4=45.8)
C2:
PF0004624=Homeobox=FE(43.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGATGCCTGGAGAAAAT
R:
CGTACGCTCAGACCTGTCTCT
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]