BtaEX6046277 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98412555-98414909:+
Coord C1 exon
chr11:98412555-98412655
Coord A exon
chr11:98412758-98412887
Coord C2 exon
chr11:98414695-98414909
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCCCTCCGCCCACAGCAT
3' ss Score
10.19
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GGCCAGTGCCTTTTTGAGCAATGCGCCTTTCTGGATGCCTTGACCGTTTTCTCCCAAGCCTCTGAGCTCCAGCCTGAGAAATTCTGCTTCCGGTATCGATG
Seq A exon
CATGGCCTGTCTCCTGGCCCTCAAAAAGCATCGTGAATGCCTCTCATTCGTCACCAAGGAGGTGAAGCAAGGCACCACCAATGCGGATGTCTACATCCTCCGGGCCAGGCTCTACAACTTCTTCCAGAAG
Seq C2 exon
CCCAACCTCTGCTATCGAGACCTACACAGTGCCTTGCTATTGGATCCCAAGCACCCACAGGCCAAGGTGCTGCTCCAGGTGATGGTGGGCCAGGCCGAGCAGGCACGCCAAGATGCCGGGGTCCTGGCCGTGCAGGGCAAGTTGCAACATGCGCTGCAGTGCATCAACTGTGCCATTGAGAACAACCCTCTGGACCCCAGCTTCTTCCTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(53.2=100)
A:
PF134141=TPR_11=PD(30.6=43.2)
C2:
PF134141=TPR_11=PU(61.8=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCCCAAGCCTCTGAGCT
R:
GGGTCCAGAGGGTTGTTCTCA
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]