MmuEX6100615 @ mm10
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32770052-32772210:-
Coord C1 exon
chr2:32772110-32772210
Coord A exon
chr2:32771889-32772018
Coord C2 exon
chr2:32770052-32770266
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCTCTGCCCCCAGCAT
3' ss Score
10.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTCAGTGCCTGTATGAGCTGTGTGACTTCCAGGAAGCCCTCTGTGTCTTCCTGCAAGCCTCCGACCTCCAGCCCCAAAACGCTTCCTTCAGTTACCGATG
Seq A exon
CATGGCCTGCCTGCTGGCCCTCAAGCGGTATCACGACTGCCTCGCCCTCATCACTAGGGAGGTGAAGCAGGGCAGGGCCAGCGCTGATGTCTACATCCTCCGGGCTCGGCTCTACAACTTCTTCCAGAAG
Seq C2 exon
GCCAAGCTCTGCTATCAGGACCTTCGAAGCGCCTTGCTCCTAGATCCCTTGCACGCACAGGCCAAAGGGCTACTCCAGAAGATGGTGGACCAGGCCAAGCAGTCTCTCCAAGATGCCAGCACCCTGGCCGTGCAGGGCAAGGTGCACCGTGCACTGAAGTGCATCAACTGTGCCATTGAGAACAATCCCCTGGATCCCAACTTCTTCTTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'10-13,'10-10,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(49.3=100)
A:
PF134141=TPR_11=PD(34.3=52.3)
C2:
PF134141=TPR_11=PU(62.7=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGACTTCCAGGAAGCC
R:
TGGCACAGTTGATGCACTTCA
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types