HsaEX6063118 @ hg38
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127720078-127723333:+
Coord C1 exon
chr9:127720078-127720178
Coord A exon
chr9:127720266-127720395
Coord C2 exon
chr9:127723119-127723333
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCCCTCTGCCCTCAGCAT
3' ss Score
10.01
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGACAATGCCTTTTTGAGCAGTGTGCCTTCCTGGATGCCCTGAATGTCTTCTCACATGCTGCTGAGCTCCAGCCTGAGAAACCATGCTTCCGTTACCGATG
Seq A exon
CATGGCCTGTCTCCTGGCCCTCAAGCAGCATCAGGCCTGCCTCACGCTCATCACCAACGAGCTGAAGCAGGACACCACCAACGCCGATGTCTACATCTTCCGGGCCAGACTCTACAACTTTCTCCAGAAG
Seq C2 exon
CCCCACCTCTGCTACCGGGACCTGCACAGCGCCTTGCTGTTGAATCCCAAGCACCCGCAGGCCAGGATGCTGCTCCAGAAGATGGTGGCCCAGGCCCAGCAGGCGCGCCAAGATGCGGGGATCCTGGCTGTGCAGGGCAAGCTGCAGCACGCACTGCAGCGGATCAACCGTGCCATCGAGAACAACCCTCTGGACCCCAGTCTCTTCCTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(62.7=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGATGCCCTGAATGTCT
R:
GTTCTCGATGGCACGGTTGAT
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains