BtaEX6046292 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004695 | CDK9
Description
Bos taurus cyclin-dependent kinase 9 (CDK9), mRNA. [Source:RefSeq mRNA;Acc:NM_001014935]
Coordinates
chr11:98475077-98476633:+
Coord C1 exon
chr11:98475077-98475158
Coord A exon
chr11:98476026-98476116
Coord C2 exon
chr11:98476467-98476633
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTCTCCCACCCAGTTC
3' ss Score
9.34
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGAGGTGTTTAAGGCAAAGCACCGCAAGACTGGCCAAAAGGTGGCCCTGAAGAAGGTACTGATGGAGAACGAGAAAGAGGGG
Seq A exon
TTCCCCATTACAGCATTGCGGGAGATCAAGATCCTCCAGCTTCTAAAACACGAGAATGTGGTCAACTTGATTGAGATCTGTCGAACCAAAG
Seq C2 exon
CTTCCCCCTATAACCGCTGCAAAGGCAGTATATACCTGGTGTTTGACTTCTGTGAGCATGATCTTGCTGGGCTGCTGAGCAACGTTTTAGTCAAGTTCACACTATCTGAGATCAAGAGGGTCATGCAGATGTTGCTTAACGGCCTCTACTACATCCATAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004695-'4-6,'4-3,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.1=100)
A:
PF0006920=Pkinase=FE(10.1=100)
C2:
PF0006920=Pkinase=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTAAGGCAAAGCACCGC
R:
CTAAAACGTTGCTCAGCAGCC
Band lengths:
168-259
Functional annotations
There are 1 annotated functions for this event
PMID: 23140174
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, protein kinase assay, western blot. ELM ID: ELMI003213; ELM sequence: TKASPYNR; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]