GgaEX0006902 @ galGal3
Exon Skipping
Gene
ENSGALG00000005045 | CDK9_CHICK
Description
NA
Coordinates
chr17:5526996-5529769:-
Coord C1 exon
chr17:5529688-5529769
Coord A exon
chr17:5529106-5529196
Coord C2 exon
chr17:5526996-5527162
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCTTCTCCTTTCCAGTTC
3' ss Score
10.66
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GGAAGTGTTCAAAGCCAAGCACCGGCAGACGGGCAAAAAGGTCGCGCTGAAGAAGGTGTTGATGGAAAATGAGAAGGAGGGG
Seq A exon
TTCCCCATCACAGCTCTGCGAGAGATTAAAATCCTCCAGCTGCTCAAGCATGAGAATGTGGTGAACCTCATAGAAATCTGTAGGACCAAAG
Seq C2 exon
CCTCTCCATACAACCGCTGCAAGGGAAGTATCTACCTGGTGTTTGACTTCTGTGAGCACGACCTGGCTGGCCTTCTCAGCAACACCCACGTCAAGTTCACGCTCTCAGAGATCAAGAAAGTTATGCAGATGCTATTGAATGGACTGTATTACATCCACAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005045_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(37.5=100)
A:
PF0006920=Pkinase=FE(10.1=100)
C2:
PF0006920=Pkinase=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCAAAGCCAAGCACCG
R:
CGTGAACTTGACGTGGGTGTT
Band lengths:
180-271
Functional annotations
There are 1 annotated functions for this event
PMID: 23140174
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, protein kinase assay, western blot. ELM ID: ELMI003213; ELM sequence: TKASPYNR; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]