BtaEX6046401 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98963192-98965017:+
Coord C1 exon
chr11:98963192-98963350
Coord A exon
chr11:98964751-98964820
Coord C2 exon
chr11:98964926-98965017
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCTGTTTTCCTCAGATA
3' ss Score
9.58
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGTCCTTGAGATCCATGCCAACCTGGACCCCTCGCTCAACTTCTTCTGCTCCGGTCCCTGGGAGCCCAGCACGGTGCCCGCCGGCACGAAGCACCTGGACCCGCTCCTGGAAGATGCCCCCAAGCACCAGCCCAGCCGTCCCAACAAGGGCTTTGTAG
Seq A exon
ATAAGCTCTTCTACATCTACACGTCAGGCACCACCGGGCTGCCCAAAGCTGCCATCGTGGTGCACAGCAG
Seq C2 exon
GTATTACCGGATGGCTGCCCTGGTGTACTACGGCTTCCGCATGCGGCCCGACGACATCGTCTATGACTGCCTCCCCCTCTACCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.2=100)
A:
PF0050123=AMP-binding=FE(5.3=100)
C2:
PF0050123=AMP-binding=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCCATGCCAACCTGGA
R:
TAGTACACCAGGGCAGCCATC
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]