RnoEX6016218 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8368698-8370656:+
Coord C1 exon
chr3:8368698-8368856
Coord A exon
chr3:8370392-8370461
Coord C2 exon
chr3:8370565-8370656
Length
70 bp
Sequences
Splice sites
3' ss Seq
TACATGTCTGTTTCCTTCAGATA
3' ss Score
9.98
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGTCTATGAGATCCAGGCTATCCTGGACCCCACACTCACCCTCTTCTGCTCTGGTTCCTGGGAGCCCAGCACCGTGCCTGCCAACACAGAGCATCTGGACCCTCTGCTGGAAGATGCCCCGAAGCACCTGCCCAGCATCCCAGACAAGGGTTTTACAG
Seq A exon
ATAAGCTCTTCTATATCTACACGTCGGGCACCACGGGGCTACCCAAAGCTGCCATTGTGGTGCACAGCAG
Seq C2 exon
GTATTACCGAATGGCTGCCCTGGTGTACTATGGATTCCGCATGCGGCCTGATGACATTGTCTATGACTGCCTCCCCCTCTACCACTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.2=100)
A:
PF0050123=AMP-binding=FE(10.3=100)
C2:
PF0050123=AMP-binding=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGGACCCCACACTCAC
R:
ATAGTACACCAGGGCAGCCAT
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]