GgaEX1053189 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5608107-5608900:-
Coord C1 exon
chr17:5608742-5608900
Coord A exon
chr17:5608311-5608380
Coord C2 exon
chr17:5608107-5608198
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTCATTCCTCCCCAGATA
3' ss Score
9.8
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTATGAAGGAGGTGCAGTCCTCCATGGAGAAGTCTGTCCATCTCTTCTGGTCAGGAGAAGGAAGCCCTGAGTCCGCACTTTCTGGTGCAAAGCACCTGGATCCCCTCCTGCAGACAGCTCTTCGACAGCAGCCAGATCCCCCTGAGAAGGGCTTTCTCG
Seq A exon
ATAAACTCTTCTATATCTATACCTCTGGCACTACGGGAATGCCCAAGGCTGCTATTGTGGTCAACTGCAG
Seq C2 exon
GTATTTCCGCATGGCCAGCTTGGTTTTTTATGGTTTCCGCATGAGACCCGATGATGTGATGTATGATTGCCTTCCACTTTACCACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.2=100)
A:
PF0050123=AMP-binding=FE(5.3=100)
C2:
PF0050123=AMP-binding=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGAAGGAAGCCCTGAG
R:
CACATCATCGGGTCTCATGCG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]