BtaEX6046505 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99237520-99240510:+
Coord C1 exon
chr11:99237520-99237703
Coord A exon
chr11:99240168-99240314
Coord C2 exon
chr11:99240401-99240510
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTCACTACGCTCCCCGACAGGGA
3' ss Score
6.34
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCTCAGGCCCAGCTCCAGGAGTCCTGCCAGAAACTGGACCTCCTGCGGCTGGCCTTGGAGCAGCTGCTGGAGAGACTGCCTCCTGCCCACCCTCTGCGCGGCAGAGTGGCCCGGGAGCTGCGGACTGCTGCGTCTGGGAACCCACAGCCTTCAGGGACGCTCGTGAAGCCCACCGCCATGACAG
Seq A exon
GGACGCTGCAGGTCCGCCTCCTGGGCTGTGAGCAGCTGCTGATAGCGGTGCCTGGACGTTCCCCCGCGGCCGCGCTGGCCGGGAGCCCCTCCCAAGGCTGGCTTCGGAGCAGAGCCAAGCAGCAGCGTGGGGGAGGCGAGCTGGCCA
Seq C2 exon
GTGAGGTGCTGGCTGTGTTGAAGGTGGACAATCGCGTTGTGGGCCAGACAGGCTGGGGGCCTGTGGCCAAGCAGTCCTGGGACCAGAACTTTGTTATCGCCCTGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTCCTGCCAGAAACTG
R:
TTCTGGTCCCAGGACTGCTTG
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]