DreEX0055871 @ danRer10
Exon Skipping
Gene
ENSDARG00000101983 | pkn2
Description
protein kinase N2 [Source:ZFIN;Acc:ZDB-GENE-061207-42]
Coordinates
chr2:22795099-22798698:+
Coord C1 exon
chr2:22795099-22795327
Coord A exon
chr2:22798286-22798468
Coord C2 exon
chr2:22798589-22798698
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACTATTGCTGATTAAAACAGGTA
3' ss Score
4.87
5' ss Seq
CCAGTTGAG
5' ss Score
-17.25
Exon sequences
Seq C1 exon
GCCCAAGCCAGATTCAATGAGTCCAGTCAGAAGCTGGATTTGTTGAAGTATTCCCTGGAGCAGAGACTCAATGAGCTTCCCAAGAACCACCCGAAGTGCAGTTTGATCATGGAGGAGCTATCTCTGATGTCCTCTCCGGCTCTCAGTCCTCGCCAGAGCTTCATATCCACCCAAAACCACAACAGCACTGTGAAGAACCAGTACAGCACCAAACCAGCAGCTCTCACAG
Seq A exon
GTAAGCTGGAGGTTCGGCTCATGGGATGTCAGGATTTGTTAGAGAGTGTGCCTGGCCGCTCTAAAGCCACGTCGGTACCGCTGCCCGGTTGGAGCCCCAGTGAAACTCGCTCATCTTTCATGAGCCGTGGAAACCGCAGAGGAACCAGCGTTCGAAACCTCTCTAAAAATGACGACTTGTCCA
Seq C2 exon
ATGAGATTAGTGCTGTTCTGAAGCTTGACAACACTGTAGTGGGTCAAACCAGCTGGAAACCTGTCAGTAACCAGTCATGGGACCAGAAGTTTACATTGGAGCTTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101983-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.435 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=40.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCAAGAACCACCCGAAG
R:
ACTTCTGGTCCCATGACTGGT
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]