GgaEX0008905 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:15886316-15889772:-
Coord C1 exon
chr8:15889559-15889772
Coord A exon
chr8:15886714-15886899
Coord C2 exon
chr8:15886316-15886425
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGTTGTTTGTCTTGTTCTAGGTA
3' ss Score
9.97
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
GCACAAGCAAGATTTAATGAATCAAGCCAGAAGTTGGACCTGTTAAAGTATTCACTGGAACAGAGATTGAATGAACTTCCTAAAAACCATCCCAAAAGTAGTATTATTATAGAGGAGCTTTCATTGGTCTCTTCACCCACATTAAGTCCTCGTCAAAGTGTAATATCTACTCAGAACCAATACAGTACACTGTCCAAACCAGCAGCTTTAACAG
Seq A exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
Seq C2 exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(33.3=40.3),PF0218511=HR1=PD(43.8=44.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGTTAAAGTATTCACTGGA
R:
AGGTTTCCAGCTAGTCTGACCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]