RnoEX6011817 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248770225-248779615:-
Coord C1 exon
chr2:248779402-248779615
Coord A exon
chr2:248771161-248771346
Coord C2 exon
chr2:248770225-248770334
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCATATTTGTTTATTAACAGGTA
3' ss Score
8.3
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
GCCCAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTAAAATATTCACTAGAGCAGAGGTTAAATGAACTCCCCAAGAATCACCCCAAAAGCAGTGTCGTCATTGAGGAGCTCTCCCTTGTTGCATCGCCAACCCTGAGTCCACGACAGAGTATGCTGTCCACGCAGAACCAGTACAGCACACTGTCCAAGCCAGCAGCACTAACCG
Seq A exon
GTACTTTGGAAGTTCGTCTCATGGGGTGCCAAGATATCCTGGAGAATGTCCCTGGACGGTCAAAAGCGACATCCGTAGCACTGCCTGGATGGAGTCCAAGTGAAAACAGATCATCGTTTATGAGCAGAACTAGTAAAAGTAAAAGTGGAAGCAGTCGCAACCTCCTGAAAACCGACGACTTGTCCA
Seq C2 exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTATCTGGAAGCCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'25-14,'25-13,28-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.255 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.8=44.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGTTAAATGAACTCCCCA
R:
AACTTCTGGTCCCACGACTGA
Band lengths:
246-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]