DreEX0006836 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25342625-25349723:-
Coord C1 exon
chr6:25349510-25349723
Coord A exon
chr6:25347210-25347395
Coord C2 exon
chr6:25342625-25342734
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTGTAAATCCACAGGCA
3' ss Score
8.8
5' ss Seq
CCAGTTGAG
5' ss Score
-17.25
Exon sequences
Seq C1 exon
GCTCAAGCCCGCTTGAATGAGTCTAGTCAGAAGCTGGACTTGCTGAAGTTTTCTCTGGAGCAGAGGCTCAGCGAACTGCCCAAAAATCACCCAAAGGGCACCCTGATCATGGAGGAGTTAGCAATGGTGGCCTCCCCTCCTAACAGTCCCCGCCAAAGCATCATGTCCACCAGCAACCAGTACAGCACTGTGGCCAAACCTGCTGCCCTGACCG
Seq A exon
GCACATTAGACGTGAGGCTCATGGGCTGTCAGGACCTTCTGGAGAACGTCCCGGGTCGCTCGAAGACAGCATCTGTTTCTCTGCCCGGCTGGAGCCCTAGTGAAGCACGCTCTTCATTTATGAGCCGAGGAAACAAGAACAAATCTGGCAGCAGCAGAACCCTCTCCAAGTCTGATGATCTGTCCA
Seq C2 exon
ATGAAATCAGTGCCGTTCTAAAGTTGGACAACACAGTTGTGGGACAGACCCATTGGAAGCCAGTTAGCAACCAATCTTGGGACCAGAAGTTCACGCTGGAACTTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293-'8-7,'8-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(33.3=40.3),PF0218511=HR1=PD(43.8=44.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAACTGCCCAAAAATCACC
R:
GTTCCAGCGTGAACTTCTGGT
Band lengths:
246-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]