MmuEX6074481 @ mm10
Exon Skipping
Gene
ENSMUSG00000004591 | Pkn2
Description
protein kinase N2 [Source:MGI Symbol;Acc:MGI:109211]
Coordinates
chr3:142820537-142829094:-
Coord C1 exon
chr3:142828881-142829094
Coord A exon
chr3:142821519-142821704
Coord C2 exon
chr3:142820537-142820646
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTATATTTGTTTATTAACAGGTA
3' ss Score
8.53
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
GCACAAGCGAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTAAAGTATTCACTAGAGCAAAGGTTAAATGAGCTCCCCAGGAATCACCCCAAAAGCAGTGTCGTCATTGAGGAGCTTTCACTGGTTGCGTCACCAACCCTGAGTCCACGGCAGAGCATGCTGTCCACGCAGAACCAGTATAGCACACTGTCCAAGCCAGCGGCGCTAACCG
Seq A exon
GTACTTTGGAAGTTCGTCTTATGGGGTGCCAAGATATCCTAGAGAATGTACCTGGACGGTCAAAAGCAACGTCGGTAGCACTACCTGGGTGGAGTCCAAGTGACAACAGATCGTCTTTTATGAGCAGAACCAGCAAGAGTAAAAGTGGGAGTAGTCGCAACCTCCTGAAAACGGATGACTTGTCCA
Seq C2 exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTAGCTGGAAACCCATTTCAAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004591-'35-15,'35-13,38-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.324 C2=0.005
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.8=44.4)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAAATGAGCTCCCCAGGA
R:
AACTTCTGGTCCCACGACTGA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types