GgaEX0008905 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14127594-14131050:-
Coord C1 exon
chr8:14130837-14131050
Coord A exon
chr8:14127992-14128177
Coord C2 exon
chr8:14127594-14127703
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGTTGTTTGTCTTGTTCTAGGTA
3' ss Score
9.97
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
GCACAAGCAAGATTTAATGAATCAAGCCAGAAGTTGGACCTGTTAAAGTATTCACTGGAACAGAGATTGAATGAACTTCCTAAAAACCATCCCAAAAGTAGTATTATTATAGAGGAGCTTTCATTGGTCTCTTCACCCACATTAAGTCCTCGTCAAAGTGTAATATCTACTCAGAACCAATACAGTACACTGTCCAAACCAGCAGCTTTAACAG
Seq A exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
Seq C2 exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.8=44.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGTTAAAGTATTCACTGGA
R:
AGGTTTCCAGCTAGTCTGACCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]