GgaEX1044098 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5852376-5853523:+
Coord C1 exon
chr17:5852376-5852571
Coord A exon
chr17:5852977-5853168
Coord C2 exon
chr17:5853414-5853523
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCTAAAATTCTTCAGGAA
3' ss Score
7.8
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GCTCAGGGTCGTTTGCAAGAGTCCTCTCAGAAGATTGACCTGCTGCGCTTGTCCTTGGAATGTCAGCTTAGTGGGCTTTCTCCAGATCACCCGAAACGAGCACTCATCAAGCAGGAATTAGTAAATACCTCTTCCCTGGGAGCACAGCATGGCATTATCCAACCCACTTCAGTCATCAAACCTACAGCCCTTACAG
Seq A exon
GAACGTTGGAAGTGAGACTGATGGGGTGTCAGGATCTATTGGAAAATGTTCCTGGCCGTTCCCGAATGGCTGGTTCTTCTCCTGTCTGCGGCAGCCCAAGTGACTTGAAGTCCTTTTCCCTAACAAGAGTTGGCCTGGGTATCCATGGCCGTAGCGTTGCAGGAAAGTACCTGCGAAATGAAGAGCTATGTA
Seq C2 exon
ATGAAGTCCTTGCTGTGCTCAAAGTGGACAATAAAGTCGTTGGCCAAACAAACTGGGGACCAGTAAATAACCAGGCATGGGACCAGAGCTTTGTAATTGAGCTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=47.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGTTTGCAAGAGTCCTC
R:
CCAGTTTGTTTGGCCAACGAC
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]