DreEX6011634 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31241437-31245478:-
Coord C1 exon
chr5:31245262-31245478
Coord A exon
chr5:31243080-31243262
Coord C2 exon
chr5:31241437-31241546
Length
183 bp
Sequences
Splice sites
3' ss Seq
GTGCGTGCATTTGTTTTCAGGGC
3' ss Score
9.18
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTCAGGCCCGTTTGCAGGAATCCTCTCAAAAACTGGACCTGTTGCGTTTGTCTCTGGAGCAGCAGCTTGGAGAACTTCCCCAAGACCATCCCAAACGAGCTGCCATTAAAGAAGAGCTGACAGTAGGTTCCTCTCCTGGTATTGGGTTGCAAAGGGAACGCCTGCGCTCTTCATCTTCAGCATCCTCTTCTCTCTTTAAACCAGCCAGCCTGACAG
Seq A exon
GGCGATTGGAGGTCAGGTTGATGGGTTGTCAGGACCTGCTGGAGTCAGTTCCAGGCCGCTGTCGTGTAAGCAACATGTCCTCCGCTCCTGGAAGTCCATCTGACTCCAAATCACTAAGAATGAGAACCGGCCTTTCCACTCGCAGCACCAACGGCAAGACCACCAAGACTGATGAACTGTCAT
Seq C2 exon
CTGAAATCAGTGCTGTGTTGAAAGTGGATAACAAGATTGTTGGTCGCACACATTGGCGGCCGCTGAGTAAGGATGCCTGGAACCAAAGCTTTAGCATCGAACTGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.613 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.8=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGACCATCCCAAACGAG
R:
CCGCTCCAGTTCGATGCTAAA
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]