BtaEX6046535 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99322211-99325751:-
Coord C1 exon
chr11:99325626-99325751
Coord A exon
chr11:99322537-99322696
Coord C2 exon
chr11:99322211-99322300
Length
160 bp
Sequences
Splice sites
3' ss Seq
AACACCCTTGTCCTCCCCAGGGC
3' ss Score
9.8
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGATCTCAAGATGACAAAGAAACTGGAGCGGCAGCGAGCGCAGGAGGAACAGGCAAAGCGCCAACAGGAGGAAGAGGCAGCTGCCCAGAGCGAGGATCGGG
Seq A exon
GGCGGCACTACACCCTGAGCGTGGCTCTGCCAGGCTCTATCCTGGACAATGCCCAGTCACCGGAGCTTCGCACCTACCTGGCCGGCCAGATCGCCAGAGCCTGCGCCATCTTCTGTGTGGATGAGATCGTGGTGTTCGATGAAGAAGGCCAAGATGCCAA
Seq C2 exon
GACCGTGGAGGGGGAATTCAGGGGAGTTGGCAAGAAGGGGCAGGCGTGCGTGCAGCTGGCCCGGATACTGCAATACCTGGAATGTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0259812=Methyltrn_RNA_3=PU(16.7=90.7)
C2:
PF0259812=Methyltrn_RNA_3=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAAAAAGAAGTGGAAGGA
R:
TGGACATTCCAGGTATTGCAGT
Band lengths:
210-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]