HsaEX0011601 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131588819-131591139:-
Coord C1 exon
chr9:131591014-131591139
Coord A exon
chr9:131589311-131589470
Coord C2 exon
chr9:131588819-131588908
Length
160 bp
Sequences
Splice sites
3' ss Seq
AACATCCCTCCCCTGCTCAGGGC
3' ss Score
8.45
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGAAAGAGGAGAAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCG
Seq A exon
GGCGGCCCTACACACTGAGCGTAGCCCTGCCGGGCTCCATCCTGGACAATGCTCAGTCGCCGGAGCTTCGCACCTACTTGGCCGGTCAGATTGCCAGAGCCTGTGCCATCTTCTGTGTGGATGAGATCGTGGTGTTTGATGAGGAGGGCCAGGATGCCAA
Seq C2 exon
GACTGTGGAGGGGGAATTCACAGGAGTTGGGAAGAAGGGGCAGGCGTGCGTACAGCTGGCCCGGATCCTGCAGTACCTGGAGTGTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.037 C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
C2:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAAGGATCTCAAGCTGATGA
R:
AGGTACTGCAGGATCCGGG
Band lengths:
186-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)