GgaEX0006263 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5910955-5912288:-
Coord C1 exon
chr17:5912230-5912288
Coord A exon
chr17:5911605-5911764
Coord C2 exon
chr17:5910955-5911044
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTCCGCCCTCTGTCCCCAGGGC
3' ss Score
13.9
5' ss Seq
AAAGTAGGG
5' ss Score
2.67
Exon sequences
Seq C1 exon
GAAACGTGGGGGAGAAGATGGCGGACGGCAGCGAGGCGAAGCGGCCGAAAGGCGTGCAG
Seq A exon
GGCGGCACTACACGCTGAGCGTGGCCCTGCCGGGCTCCATCCTGAACAACGCGCAGTCGCTGGAGCTGCGGACGTACCTGGCCGGGCAGATCGCTCGAGCGTGTGCCATCTTCTGCGTGGATGAGATCGTGGTGTTCGACGAGCATGGAGAAGATGCAAA
Seq C2 exon
GAGCGTGGAAGGGGAATTTGAAGGAATTGGGAAGAGAGGCAAGGCTTGTGTGCAGCTGGCTCGGATACTGCAGTACTTGGAGTGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_MULTIEX1-3/6=C1-4
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.056 C2=0.097
Domain overlap (PFAM):
C1:
PF093445=Cas_CT1975=PU(9.9=65.0)
A:
PF093445=Cas_CT1975=PD(32.8=79.6),PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
C2:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGTGGGGGAGAAGATGG
R:
GAGGGCACTCCAAGTACTGCA
Band lengths:
148-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]