BtaEX6046539 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99320338-99321832:-
Coord C1 exon
chr11:99321702-99321832
Coord A exon
chr11:99320544-99320616
Coord C2 exon
chr11:99320338-99320436
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGGCTTTCTCCCAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GGCTCCTGAACCCCTTGGACAGCCCTCACCACATGCGTCAAGATGAGGAATCTGAGTTCCGAGAGGGTGTTGTGGTGGACCGGCCCACCCGGCCTGGCCAGGGCTCCTTTGTCAACTGTGGCATGAAGAAG
Seq A exon
GAGGTGAAGATTGACAAGAACTTGGAGCCTGGACTTCGGGTGACAGTGCGGCTCAACCAGAACCAGCTCCCAG
Seq C2 exon
AAAGTAAGACCTACCGGGGGAAGGTCGTGTCGTCGCAGGACCCTCGGACCAAAGCTGGTCTCTACTGGGGCTACACAGTCCGCCTGGCCTCTTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'10-9,'10-6,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.040 C2=0.265
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
A:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATGCGTCAAGATGAGG
R:
GTGTAGCCCCAGTAGAGACCA
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]