GgaEX1011722 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5909291-5910372:-
Coord C1 exon
chr17:5910242-5910372
Coord A exon
chr17:5909745-5909817
Coord C2 exon
chr17:5909291-5909389
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTGGTGACTGTCTCTGCAGGAG
3' ss Score
6.88
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGCTCCTCAACCCACTGGACAGCCCCCACCACATGCGGGTGGATGAGGATTCTGAGTACCGAGAAGGTGTGGTGTTAGATCGGCCAAGCAAGCCAGGCAGAGGCTCATTTGTCAACTGTGGGATGAAGAAG
Seq A exon
GAGGTACAGATTGACAAACAGCTGAAGCCTGGTCTGCGTGTCACTGTGCGCCTGCAGGAACCACAGAATCCAG
Seq C2 exon
AAACTAAAGTACGAAAAGGCACTGTGGTGTCTTCGCACCACCCTCGCACGGTGTCCGGTTTGTACTGGGGTTACAGCGTCCGCCTTGCCTCCTGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.440 C2=0.324
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
A:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGGGTGGATGAGGATTC
R:
CAGTACAAACCGGACACCGTG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]