HsaEX6063355 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131587050-131588431:-
Coord C1 exon
chr9:131588301-131588431
Coord A exon
chr9:131587256-131587328
Coord C2 exon
chr9:131587050-131587148
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGGCTTCTCCCCAGGAG
3' ss Score
9.47
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGCTCCTGAACCCCCTGGACAGCCCCCACCACATGCGTCAGGATGAGGAATCCGAGTTCCGAGAGGGCATCGTGGTGGATCGGCCCACCCGGCCAGGCCACGGCTCCTTTGTCAACTGTGGCATGAAAAAG
Seq A exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
Seq C2 exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-'10-14,'10-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.060 C2=0.191
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
A:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
C2:
PF0259812=Methyltrn_RNA_3=PU(24.6=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAATCCGAGTTCCG
R:
GGTGTAGCCCCAGTAGAGACC
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)