BtaEX6046606 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99567881-99568464:+
Coord C1 exon
chr11:99567881-99567981
Coord A exon
chr11:99568190-99568274
Coord C2 exon
chr11:99568365-99568464
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTACACGTCTTCCCGGCAGATC
3' ss Score
9.63
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGACCTCTCTGGCCACGTCCTCGCCTACCTGAGCCTCAGCCCCGTATTTGTCATTGTTGGTTTCGTGACCCTCATTATATTCAAGCGGGAGCTGCACACG
Seq A exon
ATCTCGTTCCTGGGGGGCCTGGCGCTCAACGAGGGGGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCACGGCCCTGTGGAG
Seq C2 exon
GTCCCCACACGGCAGTGGGCACCAAGTACGGGATGCCCTCCAGTCACTCCCAGTTTATGTGGTTCTTCTCCATCTATTCCTTCCTTTTTCTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
PF0156916=PAP2=FE(21.5=100)
C2:
PF0156916=PAP2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCTCTGGCCACGTC
R:
TGGAGAAGAACCACATAAACTGGG
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]