HsaEX0020699 @ hg19
Exon Skipping
Gene
ENSG00000167130 | DOLPP1
Description
dolichyl pyrophosphate phosphatase 1 [Source:HGNC Symbol;Acc:29565]
Coordinates
chr9:131846947-131847585:+
Coord C1 exon
chr9:131846947-131847047
Coord A exon
chr9:131847302-131847386
Coord C2 exon
chr9:131847486-131847585
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCATGCGTCTTCCCCAGCAGATC
3' ss Score
8.24
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGATCTCTCTGGCCACCTCCTTGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATATTTAAGCGGGAGCTGCACACG
Seq A exon
ATCTCCTTCCTTGGGGGCCTGGCACTGAACGAGGGGGTCAACTGGCTGATCAAAAACGTCATCCAGGAGCCACGGCCCTGTGGAG
Seq C2 exon
GCCCCCACACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTCCCAGTTTATGTGGTTCTTCTCCGTCTATTCCTTCCTTTTCCTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
PF0156916=PAP2=FE(21.4=100)
C2:
PF0156916=PAP2=PU(32.4=95.7)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCTCTGGCCACCTCCTT
R:
AGGAATAGACGGAGAAGAACCACA
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)