RnoEX0029451 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961461-8962046:+
Coord C1 exon
chr3:8961461-8961561
Coord A exon
chr3:8961768-8961852
Coord C2 exon
chr3:8961947-8962046
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATGCACATCTTTCCCAGCAGATT
3' ss Score
6.57
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCATTGTTGGTTTTGTGACCCTCATCATATTCAAGCGGGAGCTACACACG
Seq A exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq C2 exon
GCCCACACACAGCAGTGGGCACTAAATACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCTGTCTATTCCTTCCTTTTCTTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.9=2.9)
A:
PF0156916=PAP2=FE(25.9=100)
C2:
PF0156916=PAP2=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTGTCTGGCCACCTCC
R:
AGAACCACATGAACTGGGAATGG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]