BtaEX6046635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002837 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr11:100213051-100215693:+
Coord C1 exon
chr11:100213051-100213226
Coord A exon
chr11:100214809-100214936
Coord C2 exon
chr11:100215390-100215693
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGTTTCTTTGGCAAACTCAGCAA
3' ss Score
-0.86
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GACCAGTTACAGAGGTGGATCCGGGGTAACGTGAGTGCATGTGCGGGCTCTGTGTTCATATTTGATGAGATGGATAAGTTGCACCCGGGAGTCATTGACGCAATCAAGCCGTTCCTGGATTACTACGAGCAGATTGATGGCGTGTCTTACCGGAAGGCCATCTTCATCTTTCTCAG
Seq A exon
CAACGCAGGCGGAGACCTCATAACTAAGACGGCCCTTGACTTCTGGCGGGCTGGGAGAAAGAGAGAGGACATCCAGCTGAAGGACCTGGAGGCGGTGCTGTCTGTCGGAGTCTTCAATAACAAACACA
Seq C2 exon
GTGGCCTGTGGCACAGCGGCCTGATAGACCGGAACCTCATCGACTACTTCATCCCCTTCCTGCCCCTGGAGTACAGACACGTGAAGATGTGCGTGCAGGCGGAGATGAAGGCCCGCGGTTCCGCCGTCGATGAAGACGTCGTCACCCGAGTGGCAGAGGAGATGACGTTCTTCCCGAAGGACGAGAAAATATACTCAGACAAGGGCTGCAAGACCGTGCAGTCACGGCTGGACTTCTACTGAGCCCTCGTGCAGGCGGGCTGAGACGCGAGCAGGTGCCCAGCAGACCTGGGGCCGGGCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002837-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(18.2=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATAAGTTGCACCCGGG
R:
GGTGACGACGTCTTCATCGAC
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]