MmuEX6100302 @ mm10
Exon Skipping
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30955778-30959015:+
Coord C1 exon
chr2:30955778-30955953
Coord A exon
chr2:30956448-30956575
Coord C2 exon
chr2:30956812-30959015
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCATCCCTGGCCAACTCAGCAA
3' ss Score
1.41
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTCATCTTCCTCAG
Seq A exon
CAATGCAGGAGGAGACCTGATCACTAAGACGGCCCTGGACTTCTGGCGGGCAGGAAGAAAAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGCGTCTTCAACAACAAGCACA
Seq C2 exon
GTGGCCTGTGGCACAGTGGGCTAATAGACAAAAACCTCATCGACTATTTTATCCCCTTCCTGCCCTTGGAGTACAAACACGTGAAGATGTGTGTGCGGGCAGAGATGAGGGCCCGAGGGGCTGCCGTCGATGAGGACGTCGTCACCAGTGTGGCAGATGAAATGACCTTCTTCCCCAAGGATGAGAAGATCTACTCAGACAAGGGCTGCAAGACTGTGCAGTCCCGGCTGGATTTCCACTGAGCTCTTCATCCAGTGGAGTGGGAAGATTCAGGGGAACCTCCCACCCCGTTCCAGGCCTTGTCATGGAGCACTTTGAAGAGCCCCCTTGGGGCTTTGCACATTTGCACCTGTGGACTTGGGATGCTGTCAGTGCGGCATCTGAAGATGAACTTTAAGAATGCTCACACTTTACTGTGAATCAAGTGCCTAAAAAAAAAAAACCAAAACTGTCTGAACGCAGGCCAAAAGTCCTGTGTGGCCAACAGCACCCATGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCGAGGCAATGTGAGTG
R:
ACGTGTTTGTACTCCAAGGGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types