GgaEX0005573 @ galGal3
Exon Skipping
Gene
ENSGALG00000004180 | TOR1B
Description
NA
Coordinates
chr17:6252110-6259090:+
Coord C1 exon
chr17:6252110-6252285
Coord A exon
chr17:6252934-6253061
Coord C2 exon
chr17:6253367-6259090
Length
128 bp
Sequences
Splice sites
3' ss Seq
AATGTTTCTTTTATGAACAGCAA
3' ss Score
6.43
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAGCAACTGCAGAACTGGATTCGGGGCAATGTCAGCGCCTGTGCACACTCAGTCTTCATTTTCGATGAGATGGACAAAATGCATCAGGGCCTCATTGATGCCATCAAGCCCTTCTTGGACTACTATGAGCAGGTTGACGGGGTGTCCTACAGGAAAGCCATCTTCATCTTCCTCAG
Seq A exon
CAATGCTGGTGGTGACTTAATTAATAAAGCAGCTCTTGACTTCTGGACCAGTGGGAAGCGCAGGGAAGATATTCAGCTGAAAGACCTTGAGCCCATGCTGTCTGTGGGAGTCTTCAATAACAAGAACA
Seq C2 exon
GTGGACTGTGGCACAGCAGCCTCATCGACAGGAACCTCATTGACTACTTTGTTCCCTTCCTGCCCCTGGAGCACAAGCACGTGAAGATGTGTGTGCGGGCTGAGATGATCGCCCGTGGGCACGAAGTCGATGAGAAGGTTGTTGAGGCAGTGGCAGATGAAATGACATACTTCCCAAAAGAAGCAAGGATCTACTCCGATAAAGGCTGCAAGACTGTACAGGCCAAGCTGGACATCCACGAAGACATTGCAAAAGCCATGGACTGATGACCCTTCACCTCTCCAAAGCACTTTCAGAGCCTTTGGAAACTTGTCTATTTGCACTTAAGCTTTATTATTTTTTTTTTTTACTATTGCAGGGAATGTGGTGAAGATCTTAGAGTGAGTGGTGTGGGCTTTTAAGCTTTTGTTTTTTAACATAAAATCCCACTGTTCATCTCTAAACTGGCTGGTATCCAAATATTGCCCCCATTTTTTTAACCTATGAGAAGACTTGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004180_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.7=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGATTCGGGGCAATGTC
R:
ACATCTTCACGTGCTTGTGCT
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]