BtaEX6046682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100452095-100458177:+
Coord C1 exon
chr11:100452095-100452228
Coord A exon
chr11:100456452-100456527
Coord C2 exon
chr11:100458104-100458177
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTCTGTTTTATAGGAA
3' ss Score
12.17
5' ss Seq
GCAGTACGT
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATCGAGATCACAGAGAAGAATCCTGACAGCTACCTCTCAGCAGGAGAAATTCCTCTCCCCAAATTATACATTTCCATGGCCTTCTTCTTCTTTCTCTCTGGGACCATCTGGATTCACATCCTTCGAAAACGACG
Seq A exon
GAATGATGTATTTAAAATTCACTGGCTGATGGCTGCCCTTCCTTTCACCAAGTCTCTTTCCTTGGTGTTCCACGCA
Seq C2 exon
ATCGACTACCACTACATCTCCTCCCAGGGCTTCCCGATTGAAGGGTGGGCTGTGGTGTACTACATCACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
PF068148=Lung_7-TM_R=FE(8.6=100)
C2:
PF068148=Lung_7-TM_R=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTACCTCTCAGCAGGAG
R:
TGTAGTACACCACAGCCCACC
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]