MmuEX6100327 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31178254-31184871:+
Coord C1 exon
chr2:31178254-31178387
Coord A exon
chr2:31183580-31183655
Coord C2 exon
chr2:31184798-31184871
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTCTTTTTATAGGAA
3' ss Score
13.03
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
ATTGCTATCACAGAGAAGAACCCTAACAGCTACCTCTCTGCCGGGGAAATCCCTCTCCCCAAGTTATATGTTTCCATGGCCTTGTTCTTCTTTCTGTCTGGGACCATTTGGATTCACATCCTTCGTAAGAGAAG
Seq A exon
GAATGATGTATTTAAAATTCACTGGTTGATGGCCGCCCTTCCTTTCACCAAGTCTCTCTCGTTGGTGTTCCATGCA
Seq C2 exon
ATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTATACTACATAACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-'26-21,'26-20,31-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
PF068148=Lung_7-TM_R=FE(10.2=100)
C2:
PF068148=Lung_7-TM_R=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGCTACCTCTCTGCCGG
R:
ACAACAGCCCAGCCTTCAATC
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types