RnoEX0039578 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10656571-10669223:-
Coord C1 exon
chr3:10669090-10669223
Coord A exon
chr3:10663871-10663946
Coord C2 exon
chr3:10656571-10656614
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTCTTTTTATAGGAA
3' ss Score
13.03
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
ATTGATATCACCGAGAAGAATCCTGACAGCTACCTGTCTGCAGGGGAAATCCCTCTCCCCAAGTTATACGTTTCCATGGCCTTGTTGTTCTTCCTGTCTGGGACCGTGTGGATTCACATCCTTCGTAAACGAAG
Seq A exon
GAATGATGTATTTAAAATTCACTGGTTGATGGCGGCCCTTCCTTTCACCAAGTCTCTCTCCTTGGTGTTCCATGCA
Seq C2 exon
GTCAATCAGGCATTTACAAGAAGCCTCGGCCACAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
PF068148=Lung_7-TM_R=FE(8.6=100)
C2:
PF068148=Lung_7-TM_R=FE(5.1=100)
Main Skipping Isoform:
ENSRNOT00000037742fB6172
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAGAAGAATCCTGACAGC
R:
CTTTTCCATCTGTGGCCGAGG
Band lengths:
170-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]