BtaEX6046694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100775241-100777880:+
Coord C1 exon
chr11:100775241-100775360
Coord A exon
chr11:100776163-100776289
Coord C2 exon
chr11:100777497-100777880
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCACCCACCTGCCTGCCCAGACA
3' ss Score
5.56
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ACCTGGACGAGTGCCGCGTGAGAAACCTGTGCCAACATGCCTGCCGAAACACAGAGGGCAGCTACCAGTGCCTCTGCCCTGCAGGCTACCGCCTCCTCCCCAGCGGGAAGAACTGCCAGG
Seq A exon
ACATCAACGAGTGTGAGGAGGACGGCATCGAGTGTGGGCCCAGCCAGATGTGCTTCAACACCCGTGGCAGCTACCAGTGTGTGGACACGCCGTGTCCCGCCACCTACCGGCAGGGCTCCAGCCCCGG
Seq C2 exon
GACGTGCTTCCGGCGCTGCTCACAGGACTGCAGTTCAGGCGGCCCCTCCACGCTGCAGTACAAGCTGCTGCCGCTGCCCCTGGGCGTGCGCGCCCTCCACGACGTGGCCCGCCTGGCCGCCTTCTCCGAGGCCGGCATCCCCGCCAACCGCACGGAGCTCAGCGTGCTCGAGCCCGACCCGCGCAGCCCCTTCGCGCTGCGCCCGCTGCGCGCCGGACATGGCGCCATCTACACCCGCCGCGCGCTCACCCGCGCCGGCCTCTACCGGCTCACCGTGCGCGCCGCAGCGCCGCGCCACCAGAGCGTCTTCGTCCTGCTCATCGCCGTGTCCCCCTACCCCTACTGAGGGCCGCGGGCAGGGGCAGCGACCTCCGGGGATGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'103-111,'103-110,104-111=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=48.8)
A:
PF126622=cEGF=PD(12.5=7.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGGAAGAACTGCCAG
R:
GTGTAGATGGCGCCATGTCC
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]