GgaEX6045277 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:381753-383455:+
Coord C1 exon
chr8_random:381753-381872
Coord A exon
chr8_random:382511-382637
Coord C2 exon
chr8_random:383148-383455
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTTTCTTTCCCACAGACA
3' ss Score
13.02
5' ss Seq
TGGGTATGC
5' ss Score
6.57
Exon sequences
Seq C1 exon
ACATTGATGAATGTGAAGCCAGAGATACATGCCAGCACGAGTGCAGGAACACCCTGGGAAGTTACCAGTGTGCTTGTCCCTCTGGTTATCATCTTATGCCCAACGGCAAAACCTGCCAAG
Seq A exon
ACATTGATGAGTGCCTCAAGCAGGACACTGGCTGTGGAGCAAGCCAGATGTGCTTCAACATGAGAGGGAGCTACCAATGCATAGAGACATCTTGCCCACCAAACTATCAGCGGGAGCCTCATTCTGG
Seq C2 exon
GTTCTGTCTCAAAAACTGCCCGGCCAATGATTTGGAGTGTGCCCTGAGTACCTATGCCTTGGAATACAAATTTGTCTCCCTCCCCTTTGGCATAGCTGCTGGTCAGGACTTAATCCGGCTGGTTGCCTATACGCAAGATCAGGTTATGCATCCAAGGACAACTTTCTTAATGGCAGACGAGGAGCCAACAGTCCCATTTGCCCTGCGAGATGAGAACTTGAAAGGAGTTGTGTTCACCACCAGACCGCTGCAAGAGCCGAAGACTTACCACATGAGAGTCAGAGCCTTGTCTTACAGTGTTGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'126-144,'126-143,127-144=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(16.7=7.3),PF126622=cEGF=PU(83.3=48.8)
A:
PF126622=cEGF=PD(12.5=7.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGTGTGCTTGTCCCTCT
R:
GGCTCCTCGTCTGCCATTAAG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]