MmuEX6028147 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152409654-152420725:-
Coord C1 exon
chr1:152420606-152420725
Coord A exon
chr1:152412447-152412573
Coord C2 exon
chr1:152409654-152411023
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCGTGTGGTCCCTAGATG
3' ss Score
9.73
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAAAACAGAGACACTTGCCAACACGAGTGTAAAAACACGATCGGGAGCTACCAGTGCGTCTGCCCACCAGGTTATCGACTCATGCTCAATGGGAAAACGTGCCAAG
Seq A exon
ATGTAGATGAGTGCCTGGAGCAGAATGTCCGCTGTGGACCAAATCGAATGTGTTTCAACATGAGAGGAAGCTACCAGTGCATCGACACACCCTGCCCACCCAACTACCAACGGGATCCTGTTTTGGG
Seq C2 exon
GTTCTGCCTTAAGAACTGTCCACCCAATGACTTGGAATGTACCTTAAGCCCATATGCCTTGGAATATAAACTTGTCTCCCTCCCATTTGGAATAGCCGCCAATCAAGATTTAATCCGGCTGGTTGCATACACACAGGATGGCGTGATGCATCCCAGGACAACTTTCCTCATGATAGATGAGGAACCAGCTGTCCCTTTTGCCTTAAGGGATGAAAACCTGAAAGGAGTTGTGTACACTACACGTCCACTACGAGAGGCAGAGACCTACCGCATGAAGGTGGGAGCTTTATCCTACAGTGCCAATGGGACCATTGAGTATCAGACTACATTCATAGTTTATATAGCTGTGTCTGCCTATCCGTACTAGGAAGCACTCCAGAATCAAGTCCAAATATTTAAGCTGCATTGATCTAGCCATCGAGGACCTCTACAGTTTACTATCTCTTGAACAGTTGCAATCTTGGCAACTTGAAAATGGTGCTGTACTCTGTTACGTATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'109-108,'109-107,110-108=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1)
A:
PF126622=cEGF=PD(12.5=7.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGACACTTGCCAACACG
R:
CGCCATCCTGTGTGTATGCAA
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: