RnoEX0042122 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67799791-67809759:-
Coord C1 exon
chr13:67809640-67809759
Coord A exon
chr13:67802690-67802816
Coord C2 exon
chr13:67799791-67801177
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTGTGTGGTCCCTAGATG
3' ss Score
9.82
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAAAACAGAGATACTTGCCAACATGAGTGTAAAAACACGATCGGAAGCTACCAGTGCGTCTGCCCACCGGGTTATCGACTCATGCTCAATGGGAAAACATGCCAAG
Seq A exon
ATGTCGATGAGTGCTTGGAGCAGAATGTACGCTGTGGGCCGAATCGCATGTGTTTCAACATGAGAGGAAGCTATCAGTGCATCGACACACCCTGTCCACCCAACTACCAACGAGATCCTGTTTTGGG
Seq C2 exon
GTTCTGCCTCAAGAACTGCCCACCCAATGACTTGGAATGCACCTTGAGCCCCTATGCCTTGGAATATAAACTTGTCTCCCTCCCATTTGGAATAGCTGCCAATCAAGATTTAATCCGGCTGGTTGCATACACACAGGATGGAGTGATGCATCCCAGGACAACTTTCCTCATGGTAGATGAGGAACCAGCTGTCCCTTTTGCCTTAAGGGATGAAAACCTGAAAGGAGTCGTGTACACTACACGTCCACTACGAGAGGCAGAGACCTACCGCATGAAGGTGCGGGCTTTATCCTACAGTGCCAACGGGACCATTGAGTATCAGACTACATTCATAGTTTATATAGCTGTGTCTGCCTATCCATACTAGGAAGTACTCCAGAATTGAGTCCAAATATTTAAACTGCATTGATCTAGCAATCAAGGACCTCTACAATTTACTATCTCTTGAACAGTTGCAATCTTGGCAACTTGAAAATGGTGCTGTGCTGTTATGTATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1)
A:
PF126622=cEGF=PD(16.7=9.3),PF129472=EGF_3=WD(100=81.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGTTATCGACTCATGC
R:
TAAGGCAAAAGGGACAGCTGG
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]