BtaEX6046712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100748712-100750572:+
Coord C1 exon
chr11:100748712-100748868
Coord A exon
chr11:100749695-100749816
Coord C2 exon
chr11:100750408-100750572
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCTGTCCTTCCAGACT
3' ss Score
11.43
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGCCTCCAGCCATCGCCCCCGGCCCCTCCAACCTGACCCTGACTGCTTACACCCCAGCCTCACTGCCCTGTGAGGCCAGTGGCTCCCCCAAGCCCCTCGTGGCCTGGTGGAAGGACGGACAGAAGCTGGACTTCCGCCTGCAGCAGGGCGCCTACAG
Seq A exon
ACTCCTGCCCTCCAATGCCTTGCTCCTTGAAGAGCCCAGCCCCCAGGACTCAGCCCTGTTTGAGTGTGTGGTGAGCAATGGAGTGGGCGAGGCCCGCAAGCTCTACTGGGTGACGGTTCATG
Seq C2 exon
TGCCTCCCGCCATTGCCGACGACCAGACAGACTTCACCGCGACCATCATGGCGCCCGTGGTCCTCACGTGCCACAGCACGGGTGTGCCAGCCCCGGTCGTGTCCTGGAGCAAAGCAGGCACCCGGCTGGGGGTGCGAGGCAACGGCTACCGTGTGTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'81-88,'81-87,82-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(55.3=98.1)
A:
PF138951=Ig_2=FE(43.6=100)
C2:
PF138951=Ig_2=PD(0.1=0.0),PF0767911=I-set=PU(60.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCCTGACTGCTTACA
R:
GCTTTGCTCCAGGACACGAC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]