MmuEX6100351 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31426797-31429119:+
Coord C1 exon
chr2:31426797-31426953
Coord A exon
chr2:31428188-31428309
Coord C2 exon
chr2:31428955-31429119
Length
122 bp
Sequences
Splice sites
3' ss Seq
CATCCCTCTGTCCATCCCAGGCT
3' ss Score
8.49
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGCCCCCGGCCATTGCTCCTGGCCCCTCCAACCTGACCCTGACGGCCTACAGCCCAGCCTCGCTGCCCTGTGAAGCCAGAGGCTCTCCCAAGCCCTTGGTGACCTGGTGGAAGGATGGGCAGAAGCTGGACCTCCGCCTACAGCAAGGCGCCTACCG
Seq A exon
GCTTCTGCCTTCCAATGCCCTGTTCCTCACCGCTCCCAGCCCTCAGGACTCAGCCCAGTTTGAGTGTGTCGTGAGCAATGAGGTGGGAGAGTCCCGCAGGCGCTACCAGGTGACCGTCCATG
Seq C2 exon
TGCCTCCCACCATTGCGGACGACCAGACACATTTCACGGTGACCAGGATGGCACCTGTGATCCTCACGTGCCACAGCACAGGGTCACCAACCCCAGCCGTGTCCTGGAGCAAGGCAGGCACCCAGCTGGGAGCAAGGGGCAGCGGCTACCGCATCTTGCCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'88-110,'88-99,98-110=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.214 C2=0.107
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(55.3=98.1)
A:
PF138951=Ig_2=FE(43.6=100)
C2:
PF138951=Ig_2=PD(0.1=0.0),PF0767911=I-set=PU(60.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCAACCTGACCCTGAC
R:
CTGCCTTGCTCCAGGACAC
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types