RnoEX6016379 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10417385-10419661:-
Coord C1 exon
chr3:10419562-10419661
Coord A exon
chr3:10418212-10418333
Coord C2 exon
chr3:10417385-10417549
Length
122 bp
Sequences
Splice sites
3' ss Seq
CATCCATTTGTCTGTCCCAGGCT
3' ss Score
8.96
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CCTCACTGCCCTGCGAGGCCAGCGGCTCTCCCAAGCCCCTGGTGACCTGGTGGAAGGATGGGCAGAAGCTGGACTTCCGCCTGCAGCAAGGCGCCTACCG
Seq A exon
GCTCCTGCCTTCCAGTGCCCTGCTCCTCACAGCTCCCAGCCCTGAGGACTCAGCCCAGTTTGAGTGTGTGGCGAGCAATGAGATGGGCGAGTCCCGCAGGCGCTACCAGGTGACTGTCCACG
Seq C2 exon
TGCCTCCCACCATTGCGGACGACCAGACGCATTTCACAGTGACCAGGATGGCACCTGTGGTCCTCACTTGCCACAGCACAGGGTCACCAGCTCCAGCAGTGTCTTGGAGCAAGGCAGGCACTCAGCTGGGAGCAAGGGGCAGTGGTTACCGAGTCTTGCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'17-23,'17-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACTGCCCTGCGAGG
R:
CAAGACTCGGTAACCACTGCC
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]