BtaEX6046767 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100646369-100649359:+
Coord C1 exon
chr11:100646369-100646513
Coord A exon
chr11:100647044-100647165
Coord C2 exon
chr11:100649087-100649359
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGCTGTCCTGTGTTTGCAGGGA
3' ss Score
7.97
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGCCCCCCTGGTCAGCATGCCCCCCAGGATCCATGGCTACCTACACCAGCCCCTGCAGGTCTCCTGCTCTGTGCACAGCGCCCTCCCCTTCCGGCTACAGCTGTGGCGGGACGGAGCCAGGCTGGGTGAGGAGAGGCGCTTTCG
Seq A exon
GGAGTCAGGGAACAGCAGCTGGGAGATTCCACGGGCCTCCAAGGCCGAAGAAGGCACGTATGAGTGCACGGCAGTCAGCCGGGCGGGGACCGGACGAGCAAAGACTCAGATCGTCGTCACAG
Seq C2 exon
GCCCCCCGCCGCAGCTGGTCCCTGTCCCCAATGTGACCGTGTCCCCTGGAGAGACCGCCATCCTGTCCTGCCTGGTCCTGAGTGAGGCCCCCTACAACCTGACCTGGGTCCGGGACTGGCGAGTCCTCTCGGCCTCGACGGGCAGAGTCACCCAGCTGGCCGACTTATCCCTGGAGGTCAGGAACACCACCCCCAGTGACGGCGGGCGGTACCAGTGCATGGCCAGCAACTCCAATGGAGTCACGAGGGCATCCGTCTGGCTCCTGGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.571 C2=0.250
Domain overlap (PFAM):
C1:
PF0004720=ig=PU(56.9=67.3)
A:
PF0004720=ig=PD(41.4=57.1)
C2:
PF138951=Ig_2=WD(100=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCTTCCGGCTACAG
R:
TGACCTCCAGGGATAAGTCGG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]