MmuEX6100405 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31205498-31208401:+
Coord C1 exon
chr2:31205498-31205642
Coord A exon
chr2:31206039-31206160
Coord C2 exon
chr2:31208129-31208401
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTGCTGCTTTTGCAGAGA
3' ss Score
9.29
5' ss Seq
CAGGTCGAT
5' ss Score
1.71
Exon sequences
Seq C1 exon
GTGTGCCGCTGGTCAGCATGGCTCCTAAGATCCATGGTTACCTACAGCAGCCCCTGCTGGTGTCCTGCTCTGTGTATAGCACCCTCCCCTTCCAGCTACAGCTGCAGAGAGATGGAGAGAGGCTGGGCGAGGAGCGGTACTTTCA
Seq A exon
AGAGTCGGGAAACAGCAGCTGGGAGATCCCGAGAGCCTCTAAGGCTGAGGAAGGCACGTACCAGTGCATAGCCGTCAGCAGAGCTGGGTCAGGACGAGCCAGCGCCCAGATTGTCATCACAG
Seq C2 exon
ACCCTCCACCACAGCTGGTCCCTGGCCCCAATGTGACCGTGTCCCCAGGGGAGACTGCCATCCTGTCATGCCAAGTCCTAGGTGAAACTCCTTACAACTTGACCTGGGTCCGGGACTGGCGAGCCTTACCAGCCACAACAGGTCGGATCTCCCAGCTGAGTGACCTGTCTCTGGAAGTCCGCAGCATCATTCCCACTGATGGTGGGCAGTACCAGTGTGTGGCCAGCAACCCAAATGGGGTCACGAGGGCAACTACCTGGCTCCTGGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.190 C2=0.120
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(52.3=91.8)
A:
PF138951=Ig_2=PD(46.5=95.2)
C2:
PF0767911=I-set=WD(100=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGAGATGGAGAGAGGC
R:
ATCAGTGGGAATGATGCTGCG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: