MmuEX6100405 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31349978-31352881:+
Coord C1 exon
chr2:31349978-31350122
Coord A exon
chr2:31350519-31350640
Coord C2 exon
chr2:31352609-31352881
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTGCTGCTTTTGCAGAGA
3' ss Score
9.29
5' ss Seq
CAGGTCGAT
5' ss Score
1.71
Exon sequences
Seq C1 exon
GTGTGCCGCTGGTCAGCATGGCTCCTAAGATCCATGGTTACCTACAGCAGCCCCTGCTGGTGTCCTGCTCTGTGTATAGCACCCTCCCCTTCCAGCTACAGCTGCAGAGAGATGGAGAGAGGCTGGGCGAGGAGCGGTACTTTCA
Seq A exon
AGAGTCGGGAAACAGCAGCTGGGAGATCCCGAGAGCCTCTAAGGCTGAGGAAGGCACGTACCAGTGCATAGCCGTCAGCAGAGCTGGGTCAGGACGAGCCAGCGCCCAGATTGTCATCACAG
Seq C2 exon
ACCCTCCACCACAGCTGGTCCCTGGCCCCAATGTGACCGTGTCCCCAGGGGAGACTGCCATCCTGTCATGCCAAGTCCTAGGTGAAACTCCTTACAACTTGACCTGGGTCCGGGACTGGCGAGCCTTACCAGCCACAACAGGTCGGATCTCCCAGCTGAGTGACCTGTCTCTGGAAGTCCGCAGCATCATTCCCACTGATGGTGGGCAGTACCAGTGTGTGGCCAGCAACCCAAATGGGGTCACGAGGGCAACTACCTGGCTCCTGGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'1-23,'1-12,9-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.190 C2=0.120
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(52.9=93.9)
A:
PF138951=Ig_2=PD(46.0=95.2)
C2:
PF0767911=I-set=WD(100=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGAGATGGAGAGAGGC
R:
ATCAGTGGGAATGATGCTGCG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types